NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188953_11809

Scaffold Ga0188953_11809


Overview

Basic Information
Taxon OID3300017813 Open in IMG/M
Scaffold IDGa0188953_11809 Open in IMG/M
Source Dataset NameSaline water viral communities from Saloum River inverse estuary, Senegal ? P2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2569
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location NameSaloum River, Senegal
CoordinatesLat. (o)14.0536Long. (o)-16.2885Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019640Metagenome228N
F074821Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0188953_118092F019640N/AMGFTERTLKKLTLGYDQRAAYRSQSTSINSIQTSVAEQETSVNLSEGFVYQEVFEADGVNKSYQVTENNGTLPDTTADIMVTRNGLFLNDSYISSLDGVNGTLELTFTPDSGDRVVIIWFYRSENEQAVFQEIFTPSGSATFTVTKNEGVLPGSLYKLFVFINGIFLDYEKVSSFSPGQGQFTLNFTPDVSDSIAAVWFKTLPESNKVIQETFSVDGSQTTFTVTKNGGKLAKVKDAILLMRNGQHINNDYITGINPTAGTITLTFAPDQGDDITLIWFVEEFVTPSNSAAVSMFQEEFTADGTTPTFTVTENEGKLPESLSAIMVYRNGQFISNQFISTHDSVTGTVTFGFVPRIGEKITIVWVVSNL
Ga0188953_118093F074821N/AYSKPEWTTDSSARVEFPVLVEFDALQTFVTVNFQILNLPSVFDYLMGFELLRAYNLNGTEIDLTAGITYLSIEWQIENVYVEFVALGYYQQQNDIYQYAVDNDDFASTNYKTGTLIGQGPTQNSPGNLQIWDGSDWVNTTNWQVVGTTADKPIGQLVVNELIKGQLKPVEYFSGMTFVMNDPVNNFLFPHLAIKYKSNYYVFQGGSINLMRDEFTGDWWKITDFS
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