Scaffold Ga0188953_10488

Overview

Basic Information

• Taxon OID: 3300017813
• Scaffold ID: Ga0188953_10488
• Source Dataset Name: Saline water viral communities from Saloum River inverse estuary, Senegal ? P2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5068
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location

• Location Name: Saloum River, Senegal
• Coordinates
  • Lat. (^o): 14.0536
  • Long. (^o): -16.2885
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040933	Metagenome	161	N
F045436	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188953_1048810	F045436	AGG	MSASRRIRAKKAVEQVGVPNPFVEGLLRRHGTNRIRLYHNDMTLRTFENQQEFIQYGTGIVGARLESRQEMASMVMNGKTVVVLARRRTYLRR
Ga0188953_104888	F040933	AGGA	MKDILNAHLTELVNNVNDGDTSPLEAWFEMKQMLDKVKWAMGLIEDAAINERESIGTDDYKVDGFRIEVVQGRKIYSFKHIGKWKELEVHRKQVEQAAKVAADTGNMVVDPYGEEIEPAELSFGKSYLKATVIR