Scaffold Ga0136617_10031159

Overview

Basic Information

• Taxon OID: 3300017789
• Scaffold ID: Ga0136617_10031159
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4757
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0586
  • Long. (^o): 163.6839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006538	Metagenome	370	Y
F012324	Metagenome	281	Y
F041055	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136617_100311595	F041055	AGGAG	MDELSVTRPSPPSTRTIVADEDFCGQVAALLLCDRAPIHDAFIGEPVEEVLEMVRWALSHEDDEDFDTAEVLTAWAKKRGRGVWSGRPRPPKNEERRLDDELTWALATFWAEHPRELAELLERVQASVSANGRS
Ga0136617_100311598	F006538	AGGAG	MSCELCGGGDMWIKTCLTPDGSRLLVCDECYGEQVSVLVIVPGDRVVMARCDHCWRYGNPREFVEISPGGRKNAYSGTCAQCEEEEGV
Ga0136617_100311599	F012324	AGGAGG	VIGPEEPRLPPGYRLDRSDPDVWTLRRPEGWVVAHFSARGATKEAIEQTAWKDHEGAGEEEYP