Scaffold Ga0136617_10013350

Overview

Basic Information

• Taxon OID: 3300017789
• Scaffold ID: Ga0136617_10013350
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7328
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0586
  • Long. (^o): 163.6839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F049538	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136617_100133506	F006289	GGAGG	LSPLTSVPILRDLMETLAQLGTRHRRRLPFMSPAIERRRPRIVAEDYAARHSIDHTLDRKAELRRLAPTDPEAARRYHQLLSYEVSGLREVVAALESISGGRDWQECIAEHRAEIARLDIEVAWCSQYLGSWQARPSA
Ga0136617_100133507	F049538	GGA	MRNLFVLLAVLGIAGMVFGVLNIVGHATGPNGVPFSFENYGGPGPIIAGLLLVAISLYLRSVWREGD