Scaffold Ga0136617_10008180

Overview

Basic Information

• Taxon OID: 3300017789
• Scaffold ID: Ga0136617_10008180
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9311
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0586
  • Long. (^o): 163.6839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004425	Metagenome	438	Y
F020315	Metagenome / Metatranscriptome	224	Y
F049355	Metagenome	146	Y
F058964	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136617_100081801	F020315	GGTGG	LGGSVDEKSLRLLKAMREQLGETSANRSVDAVAAAGSLGLYPGTLDHGLHDLLRAGYIEESADPSLTTQGRYLITFEGIAAADSA
Ga0136617_1000818014	F004425	AGG	MSARLLPAVRELYSRQPEVFYLEPYELQSLLWSLGYTEGLADEGEIAAAVEVARGDWPQWRLVA
Ga0136617_100081802	F058964	AGG	VGEGRTDRPSPDLDRVTVAQAADALGVSQDAVRKRIARLTIPHDRDESGRVYVYLTPSETVHKTGQDTVQDAASKTVQDAYVRSLEDQISFLRRELERKDAILLNMTERIPQLEAPQEHAEAPEGAEPRSATGSTQEATQRPWWRRLFGG
Ga0136617_100081804	F049355	GGA	MALCSGIKADGGRCHAQAMRNSEWCVGHDPDQAEARRRRASKGGKRGGRGRPQVEVNAVKTQLQDLVDGVLSGRIERADAAVVGQVLNVYLRAVSIELAVREQMELVGRLEELEGVLAQRDGGFGRGA