Scaffold Ga0169931_10254883

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10254883
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1429
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y
F075713	Metagenome / Metatranscriptome	118	N
F077230	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_102548831	F077230	AGGAGG	MKKWVRNGLILMATLALLTQGHNKLFTPPLGRIPDGVIENRKATKDEKDRNRKLAQEY
Ga0169931_102548832	F024719	GGAG	MSKIKRHLEENMSEVIQLPRRGKRAVVFYEVSDPQGIAVWGGESPQEALNWYRRSPIGSKIWVSQYEADEEDAKLVLDLIEITPIVLATITNTIGRFSK
Ga0169931_102548833	F075713	N/A	MKVKDVLEALNNLPLEADLAIQWYTKDDVELNLQRRITREVWEDVCEYACEEPDMSDFSIPYLLEKMERV
Ga0169931_102548834	F017469	N/A	MKTICQFCGWEIIKPEWYNNYDGGHACDDCLMDQATEREKERV