Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10205865 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0169931_10205865 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1669
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1669

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F007688	Metagenome / Metatranscriptome	346	Y
F095469	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_102058651	F095469	N/A	QSGIPYKVQARFGWDYVPENVEQAAAELMKDYFSKDTMWKNKYVKNISTFDWEFEYTGDAYTGTGNAYADNLLADYVLTTKAEII
Ga0169931_102058652	F001229	GAG	MNSIVDSVLSMQLDVYRQSEIQDPDTGAIKREWNYHRTVDCHAKGVISNSATTRSSDKQIFSNKYINDQIIQVRTSEKLTAREKVTNIRDKSGNVIWSEINFPTETPTVFEVMGTTPITDPFGAVLGYNSSMKRSENQQIGQ
Ga0169931_102058653	F001900	GGA	MLVQAASGLERLMFGNQNKILKDSTVAQISAYMYYNAQVISRLTTNKQFQSKFSSVIFAQIDKDFGEYIDALARSKPKSLHHVYEWRKVGSKTARLFDLNLLSQEGLSFKIGYKFKPSKSLVPASNQSKRRHVFANKAQIMESGTPLVISPRSAQRLVFEVDGETVFMPKGKSVTVRRPGGTAATNQFNLAHGRFFSSNLVGLSIRKSGFQRIFNAGMAKALRIPTNIKRVQFSFSPNAIRSQADSSLAQAFGGVL
Ga0169931_102058654	F007688	GGAGG	MTVNYKLDAMLELRKFLWNELKTRNIFDDEDYWSDNLNESIVPIVPVQQTAEMNQFLSGKKHIVYDKIGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10205865

Overview

Ecosystem & Geography

Associated Families

Sequences