Scaffold Ga0169931_10176654

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10176654
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004666	Metagenome / Metatranscriptome	428	Y
F024786	Metagenome / Metatranscriptome	204	Y
F083783	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101766542	F083783	AGAAGG	MDKKVQLVTYLQLHAQSLNEDLSQLSSTMERLDPAEKEFEDCDIQYNYTSGQVSATMHILDYVEEIM
Ga0169931_101766547	F024786	GGAG	LPVYRVFGTKYQNYYTIIEAADSFEAVDKANALPETAWNTVVTDDVIEATDVYLNEDTSDDLQLNI
Ga0169931_101766548	F004666	AGGA	MATKREYLLSKGITVGKRGRFSSAANKALQDAAAAGVTFQAEKPQPKK