Scaffold Ga0169931_10169514

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10169514
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1922
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F027061	Metagenome / Metatranscriptome	196	N
F038911	Metagenome / Metatranscriptome	165	Y
F086835	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101695145	F086835	GGAG	MTDEIDISKVLIEGDTATIMGVKYKRVETPQSFYDKLWGLLKTKLGDSVECDEMADRVRDLIREHIPEPKIGPGLPEYSIGFNEALRQVKMRLFNGIQ
Ga0169931_101695146	F009071	AGGAG	MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEEECRQYAYDNYTDKQQTDMCLMDWEAREWNV
Ga0169931_101695148	F038911	GAGG	MTVEKVKFVSVTRVIDDRKGIHYLDAIDENGMHWSAEMDNKQEQWLVYSKLWTRDPQQPFDL
Ga0169931_101695149	F027061	AGGAGG	MTTRALQILESTMELSMRPKSGDRQKLIARVINEVADRLCTDCGELEDPVSVLREIADEVEAL