Scaffold Ga0169931_10137835

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10137835
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2223
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F013524	Metagenome / Metatranscriptome	270	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101378353	F009135	N/A	MNKPKYYLTVNLPPNFDEVDAEMIKKDLLAYILSRNQYGAMYGPKASKKGITIDKVLYRTNED
Ga0169931_101378354	F013524	N/A	MKTNNEVVTRLREFTNNNCNTTLDPKLCEDIRYLCDEVERFSREIVKANNYMDEDHITIQRYKKKLENCQTKLNNYEPF
Ga0169931_101378355	F042296	N/A	MNRFKSIVKWIGIATLLATVAYAATVSEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDTFKENHNYTFEEITVTE
Ga0169931_101378356	F007859	N/A	MKKLLIIALLSTGCTSGMYLRYNYTKTLQALPPCSRVHSINNNYITYSMVEQLTNNVYTSQTNYYKAYYNCDGKITKTIKN