Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10131763 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2295
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2295

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F019128	Metagenome / Metatranscriptome	231	Y
F058806	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101317631	F019128	N/A	TVGKQFGAGFAPYAGLVGSIATSLFLKQPNIAAGMAGYAGAKIGQSLLGADSAIGTLLAENSYNVPTSMYLQGYDVPSMAGADIYASNYTLNGYEVPGL
Ga0169931_101317632	F004838	N/A	MISAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFSQAARHANPSVTNINENQFEVNEALLVENIAFYVKNVVGSVVNFQQVYGSNVVIVFDLVIGNKRTMKDTPVFSSGSPYAFANVANSQAQVGEEKVPSFVPRHQVFMEGAGILIPPQVQWYVQYTIFNVVTGAIIAPTDSTALGCYLFGTKVNLNFNTSI
Ga0169931_101317633	F002287	N/A	MSQVSKLSFVDGKLGAPTSGQQTTRVIFNTIINPSTTSSLTFFRSFQGLTSGQTNLTQNKLDSMESMVIKTIWLAQFDTDGSLRSIGGRVQQTLSIIVGNQTVVKNLPIQFNQGFNGQAFDRLHDNAGALSDTTGATTSLLQNAQPCEIRLLTDIVIPPQVAFEVRVDSNSAVYGTQAVVCALAGYGKIFSAGNSF
Ga0169931_101317635	F058806	N/A	MSWQIPTEIEKDFKSGKATYRTFQTVVGGQSILPVPSNSYVVIFGYDFSPAGGGYKTTGNIDGTFFVGPVNVLNLLAIRRFETQQISFYTGTDFYPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10131763

Overview

Ecosystem & Geography

Associated Families

Sequences