Scaffold Ga0169931_10100895

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10100895
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009005	Metagenome / Metatranscriptome	324	Y
F023789	Metagenome / Metatranscriptome	208	Y
F082161	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_101008952	F023789	GGAG	MVRAHNHNRINRFRMDRANSHNLNADSSEQSAPLRTGRERIELQSKIQRLQWLLTECIGLEEYELCSQIKTLIQRKYELLSTNQTENEVE
Ga0169931_101008956	F000785	N/A	MRVSNKKLGMRFDCNRLWNWAHEKLGESRCGAIAFYWDTKEEAELGYYDWEKTIWINLAQCKRMVTVQKTILHEWTHAQQSYRWWKHYDLNYGYKNNPYEIQARENEKLVKRAYKRRTK
Ga0169931_101008957	F082161	N/A	VHTNEEQNKPVRKVGNPGRKVAPGEQIAYNKTLHCNMQLFENELGEYYAVVDRLDQPTLVRGEYHPIGNRFHYPKQWGRKYAATILLEHKIKVQQDILNTASAELSKLQKCLEGIKDWPERDE
Ga0169931_101008958	F009005	N/A	MLSETVMIEKARSIGMDEELISYAKQIQRQLSGEGDTAIWIDCLEMAYNELILNELH