Scaffold Ga0169931_10091014

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10091014
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_100910142	F002060	AGG	MNLDPTAIAIAIFAAMLSGMGTAIVTGLNDNRKEKIRQKEREQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIAVKAELEETIIQLSYIDAKISKYDENESLLDS
Ga0169931_100910143	F000671	AGGA	MEKILCYSCNKTKHKLDVKKSSLLPINLFICEGCQASKFEPRWVIILAGRSSGPDYVKEFIVRRRYVGNEISASELLV
Ga0169931_100910144	F011938	AGGGGG	VKEYYDTILVVYIHEEQCHGTVENMGAFASLVKYNKYGIEHEDLFENEEFTVLNEIVFKHIEEQE
Ga0169931_100910145	F000473	GAGG	MSISPYFDNNHFKNGINLWTGEPNKPVFYTEEMKRKVWEIKKPSLLLMDVVKYPDFLALRLYEDNFLQFEGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSEGVL
Ga0169931_100910147	F013878	AGGA	MLNLTERGVEVFIRKAKNIQPFWQNYDLIIWRKDNSGFTNISGMFKNNSWGIVEIVSVDSNGIWKLPKKYVKHFK
Ga0169931_100910149	F003582	N/A	MNTYRVKLEVEAEVQAFNEEDATDYVNDIFGIDDEVKSIKIIGIKEK