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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10072115 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3497 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007359 | Metagenome / Metatranscriptome | 352 | Y |
| F010746 | Metagenome / Metatranscriptome | 299 | Y |
| F016115 | Metagenome / Metatranscriptome | 249 | Y |
| F035200 | Metagenome / Metatranscriptome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_1007211511 | F007359 | AGGA | MQLVKQNLGAHWVIGIKGSKDEIEQFHNRVYNWGGTNGELQWMSESFAYFWITLEKLERVMFKYVMNSLSDKLGKKFIGAKGGLKQVALNRVTNTIKSIPVESFVKTAQVQDFYSIGQVTAERLDEDS |
| Ga0169931_100721153 | F016115 | AGGAG | LKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDPEAYSSHYEVIAIKKHNGYEIAGIKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFNYLQEKLNNYVATSILPSGEKRGRGRPRKNVLTQNETIVE |
| Ga0169931_100721154 | F010746 | N/A | MTYKCAVSGEAISPERVEALQVLGVPEALWTKKEYSQVRKLKAVYAGDDGSNDIVICDKVDGGSLFDNEVAGEIDNDI |
| Ga0169931_100721155 | F035200 | GGAG | MIFKFIVLRDGIRVSDDMHDRPEDAEHEADFWREIIKRWPDGTKVTIKKIGG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |