Scaffold Ga0169931_10063620

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10063620
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3810
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F026195	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1006362014	F026195	GGGGG	MGFLDNLEAYIDFTEDIDKDPELESGYFTGKWSDDDDMIPGITPFFGPNK
Ga0169931_100636203	F001280	N/A	MCIECGCESVGSETGIAKIPGGILDVSRDGESGLTLNMTATPQQRENFINE
Ga0169931_100636204	F001176	N/A	MDAPLHNQPSGAVTSQEATRKNPSQGKIRSGFSGPRPATKIDTNKHGIRRETVIGQKKTRPKKV