Scaffold Ga0169931_10051608

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10051608
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4417
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013886	Metagenome / Metatranscriptome	267	N
F041194	Metagenome	160	Y
F101154	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1005160811	F101154	AGAAG	MRKIKVDKIRLLNEEHDLEVTSDIINSYKTNTSRKRVTKRGLEKYYNNLIQFMNSRFI
Ga0169931_100516085	F013886	N/A	MNEFEKPNAFAFKTKVGESKELQLCICVRKDGKWMENEIFSVPEGHPELSPYIDEQLFNVVFIAYEKDETQDGFWIKYQNSYYMKSDTILTEDMLNSGEFFNTVEKGYQSFYEQSNTSEREGVNPQTGE
Ga0169931_100516088	F041194	N/A	MENITISCNYCNTPVKLKRDKIYMNCHCCDDRRIIDIREYLIEDKHHDYLYSMFNDDYEYVNAK