Scaffold Ga0169931_10050140

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10050140
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4507
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031076	Metagenome	183	Y
F041003	Metagenome	160	N
F102843	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1005014011	F102843	AGG	MLHIISYYVCIMKIKRWIYNFFWYMNKNRYDGQRISLLERFRVFWKLRNEKTWDEKFQEWRSMKP
Ga0169931_1005014014	F041003	AGGA	MKAWTPPKEYLEPPKPPKHYRYVWLRFNGRTKFKYPLVRHKELKNKKRFPFIYIKHYGKCVGIEGLTLAKIKI
Ga0169931_1005014016	F031076	N/A	MEVKTIVIILCLSLYSCFGAELFKIGGVGIKTGDVITAPHKIEKITKDKQ