Scaffold Ga0169931_10047523

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10047523
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4686
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007569	Metagenome / Metatranscriptome	348	Y
F020347	Metagenome / Metatranscriptome	224	Y
F085168	Metagenome	111	Y
F102570	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1004752311	F007569	N/A	MRKQKMNFTPEQYKLIYNAVRRYQYEKTVLNSKEYNTCGEVLDELFDSVYTQRVEQPT
Ga0169931_1004752316	F020347	N/A	QYVAIPALAFFFSAIISYNLTPERTPQHNSTVSGSSGDLVCTSSCVVKEK
Ga0169931_100475235	F102570	GGAG	MIRKFIDWFFSPSIKPLVEDHLVIDEFYQRFVDLEQRVKVLEEENVGTTNELYRMENSLDARIDILAEHCRINTDV
Ga0169931_100475236	F085168	AGG	MWRSIRILLWQIVSDWEHRLYPYEKEDRNDYYYTVKNEDTGESYMIIEWIKSFDERIQRLQDEMLYVQSEIRSLKK