Scaffold Ga0169931_10040755

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10040755
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5225
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025215	Metagenome	202	Y
F030660	Metagenome	184	Y
F073073	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_100407554	F030660	AGGA	MNPNDIALDFMTEQEVAEILATEELLEVDMDTFDEDLLEEVATDSDYE
Ga0169931_100407558	F025215	AGAAGG	MKLKVHHPSGDVIAEVYDWAAGALLMSLYGDGSYITYKGASVWEEGTDGEGAESYDTTSMVIDSRLISMGVQLD
Ga0169931_100407559	F073073	GGGGG	LIDESDKEVTVTELMDKYMISSDEKMSTGFAKSIILNDGTNQYSGRLYWDSHDGYEMVWHSKKPPEADRPEFEYILDCITDLEN