NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10040755

Scaffold Ga0169931_10040755


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10040755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5225
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025215Metagenome202Y
F030660Metagenome184Y
F073073Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100407554F030660AGGAMNPNDIALDFMTEQEVAEILATEELLEVDMDTFDEDLLEEVATDSDYE
Ga0169931_100407558F025215AGAAGGMKLKVHHPSGDVIAEVYDWAAGALLMSLYGDGSYITYKGASVWEEGTDGEGAESYDTTSMVIDSRLISMGVQLD
Ga0169931_100407559F073073GGGGGLIDESDKEVTVTELMDKYMISSDEKMSTGFAKSIILNDGTNQYSGRLYWDSHDGYEMVWHSKKPPEADRPEFEYILDCITDLEN

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