Scaffold Ga0169931_10028511

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10028511
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6719
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F025725	Metagenome / Metatranscriptome	200	Y
F044450	Metagenome / Metatranscriptome	154	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1002851110	F056549	GGGGG	VAEPYVPIARHTTASALLAELEVTTDDAETYTDDLETAVANALTHKQTAENLVAERFELVFLVGA
Ga0169931_100285112	F025725	N/A	MASIIDDTMNILKSMNLDAQKVTTPPGYAGIQVNLPNDAQAFFVWTKIDQEDFHFRLARFWANENPFSMWVSPNLIEALAKTRVMATS
Ga0169931_100285117	F044450	N/A	MKAQILKSMIVDGRKLVAGDIIEVKGWRHAKSLANNRYIKLIEDDVVEEKVAEAPKPKVTKKTKEVAE
Ga0169931_100285118	F024770	AGGAG	MAVSHQRVSVGTTATKLTADADGRDGQTINIQVPTSGATVYLGGSGVTTTSYGYELLGGTSFSVELQQGEQVFGVVASSTQTVNVFRQGA