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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10025698 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7224 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium → Chromobacterium violaceum | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002455 | Metagenome / Metatranscriptome | 557 | Y |
| F016369 | Metagenome | 247 | Y |
| F017288 | Metagenome / Metatranscriptome | 241 | Y |
| F027823 | Metagenome / Metatranscriptome | 193 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_1002569814 | F027823 | N/A | MKVTAAKDVPCVSQSSIWQGYFEAHFMSGKEIDAKYPILNTKWKYSHHKLRDGYDGYYYAYEKEIGKEIGKGIMIDPWFREFKVNIPINDDDVFYKSKMYHTTVESNAVLLVVIKK |
| Ga0169931_1002569815 | F002455 | N/A | MKDEEFDIKDDRRTYYYNILGKMMPDHESMAAYLLDEGILCVTSAIDRYDHRECISLHININDYFVPASDAEVVTYDELPKLYELYKERKYDGVSQFVADKRGIPNIYWKDEGSDFQKRVNKKS |
| Ga0169931_100256982 | F017288 | AGGA | MADNKTPYELRWDILKEMISVTQNEWFTKKEIAERNAEKSGKQLEYIGDFPLHDAVQRAETVYNQFICKKIHN |
| Ga0169931_100256989 | F016369 | N/A | LVELLLVVAILSTIITVFVINYDSLVGNSKYYESRDNLKTFLINLKYQAAFQQKDFELTFDENYNMYSSFDDVYLLNVVTNDLKILETSSTKIVFFLDGSVQESYIVISNLEGTVTNRFIINVIGNVNYEVNTNQVYERQNQNQIQTQTKEDYTSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |