Scaffold Ga0169931_10019676

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10019676
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8681
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F024498	Metagenome / Metatranscriptome	205	Y
F026542	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1001967611	F026542	AGGA	MNLQNIEKLQHLLSDFLNPQIQEVINSYVGGSKDNPYFIEIPEEDVVDLGLDKLASLVARTSNVYGRSARFAGMARANYKLIEGKYKKVYKSSRVGKNEAEREAAAMEAAEAEYSALITCEAIVNLAESLESSARIASESARKLMDKVQSMQIASSRESKGYYLDEDFKTY
Ga0169931_1001967615	F007028	AGTAG	MPKISKNAFEQSTDSPLDSMINSNPGISISTFPVLVCGVNRKINIGNFENIDVYAGISLPLGDVSLEDKEALQAAIESAAAYGFSIVSKETGDRYVLIKESQQGK
Ga0169931_100196762	F004789	GGAG	MALPGSYKNPSTKPCWVYCSSCSRCQDKGRYTKCNGCSGRYDPAGKIDVHNDDFCDCKNGILRWRTKEGKLLITRFKTNPFKGTVKYEKKSEDERDWDSYVSDMREKMDDPNFNPISIYE
Ga0169931_1001967623	F024498	AGGAGG	MPKVEWDIVVPVKQPADLKGIAPGKLPESLLRPAAGGGKLHWLTAAAWAAMVEAAKADGIQLKPVSAGDT