Scaffold Ga0169931_10019151

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10019151
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8850
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F018684	Metagenome / Metatranscriptome	233	Y
F050167	Metagenome / Metatranscriptome	145	N
F052382	Metagenome	142	N
F057118	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1001915110	F008808	AGAAGG	MDRNIPPCPECGKRFKNVFEATDHILEDNEEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPEAIKDIVEEMIIESQMMEIDNELKQLLEKGE
Ga0169931_1001915113	F001531	GGA	LDWDNIKKWDYIVTAVASEYHKKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSIGYDISDIHYYDSEIVGALLPPVLRGEYGVTHKLNLGFIGRPSAPAEGGNLTIMMLEVDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYKDVDSTGEEPEDEYQPPVE
Ga0169931_1001915118	F057118	AGGA	MITSKGCSIMNTNNYKITIKTQAELVYYVSEYDIDRAIELAIDAPYKEWEVSYFDMPIGADVHAEQI
Ga0169931_1001915121	F050167	N/A	LASISVTLADLADELATVQFDVASVNGYEPKGTILKALPTQTRFKPKSVWVSLGNGKYKHLTGEKGLIAKASRLDGYTSVVFRP
Ga0169931_100191514	F018684	GAG	MANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTTSSTTSTKPSKYSAPTPVSAVSGTAAPLCKHGGRIWREGISKASGKPYAFWACPSPQGTPDQCKPVN
Ga0169931_100191516	F009064	GAG	MIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGRLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRYSLPDVGENIEVRSIRTQDSIPFWGKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFTKPEYYDSYINGWRIPISGFTHE
Ga0169931_100191517	F052382	N/A	MSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEIPYKFVIIKRRQVGIDKAWVVEDFEQWTKRAGK