Scaffold Ga0169931_10014852

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10014852
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10485
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F016958	Metagenome / Metatranscriptome	243	Y
F017131	Metagenome	242	Y
F024955	Metagenome	203	Y
F030063	Metagenome	186	Y
F047645	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1001485211	F017131	AGGAGG	MAFPGNFNFNYYRGDTAEFVVRPKTANGDAFDLTGFSADFFIATARGEGATQYEAQAVVDASADTITCTILPGVGRDLAAGTYVYDVQIDASASEIFTVLTGTITVTNDITGADES
Ga0169931_1001485212	F010302	AGCAG	MVDVLLNTEDVVVLGPPDSVDVLVDIGPQGTRGSKFIVGSGEPNALTASGVLFGTTLILNDMYINTAPGADYGYMYQYISQAGTNTWVQVLKINPAIYSAVQTLSFSSGSASTTIPISNIVTVSGSPLTASNFNVQFKIEGANPIAASMEIPALAGAGSNLVINFDAVEYSGGSWSALTGSKTVHLFISIV
Ga0169931_1001485213	F024955	GAGG	MAVENIGNLVPTKIPALVDDANIQDALRAYHYGSYDFDTAENDTANLLNPSIAYTINDLQEQIDDQVALELAARDISSAQNSAPVAADFTAFSNTIPDGYIWVDKDAPAPVGYLSATSIYTATEPTTGLANGVLWIKKGTSPIEVYVYNGDTSGFDQVI
Ga0169931_1001485214	F030063	AGG	MTTSFNTDGKPGFIYNAADDTWYELSGKTDTSGTFEWAGLQTYLSAVTMLESLVAKKGINNYLNPSARDASITSPTAGSICLIRQDGSGNTIHQLQFYNGSSWIPFIPAQAGNAGKVLQTDGIITSWQDASGLPEVFLLMGG
Ga0169931_100148522	F016958	AGG	MKLTITSMSGNTSTMDLPTKENVYYFIDLYKKSLKKNHRVKITCDLLGIDGYLQGTK
Ga0169931_100148524	F047645	GGAG	MQCKHVYEYVGSEICPSCGQPTHEPNLDLSHRLFLEYYKSDKPKEYVCPVDGGTIRGWWS