Scaffold Ga0169931_10009112

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10009112
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14376
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043837	Metagenome / Metatranscriptome	155	Y
F051881	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000911212	F043837	AGGAGG	MVKKIKSRYGDERTITLLEDGSYKIEGRSLYTRHGDGLFDFEGGPCYIVGDRLLDVGGNLTIESVKPIEASQENWGAVILTTKQTKTKGKQCQNT
Ga0169931_100091126	F051881	AGGAGG	MKYLIPLILFLASCTTPQIVSPLDKQGNQIHSVLKEPFFGAPSQASEWSFWYVIICVVAVYAVWREFKSVKWPKKSESSSTSEPTDSV