Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10007915 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15646
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15646

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000791510	F005054	N/A	MAEILVNTQFPITHQVFWNGELTNADTSPTVEIFDITEDPAVDPPIEPTTSLATLGTVLDENNPGTYNVSIPYVFTNRNKTLRLKWQYTVGGTSVIRYDEVSVVTPYVDFNHVQDLGFSVDPADPGYRSYKELLRAERYARKQIEKFTGQKFYLYDDLYLVKGYDSDTLPLPAKLYELHELYSNDILLLDNLNEIDNWGYEVQLAESGFGIRINRAAMLDNTVYTANGMVPPTINDSYGAFQSGVSYKVQGRFGWEKVPDNVELAAIELMKDFFSKDTAWRNKYIKSISTFDWDFEYFGESYSGTGNLYADNLLEDYVMTSKVAII
Ga0169931_1000791511	F001229	AGG	MNDIVDSVLSMSLDVYRQFDLQDSDTGALKKEWSYHRTVPCHAKGIISNSATNSSSDKQVFSNKYVNDQTIQIRTSEKLTIREKITNICDSSGNPIWVELNYPTDTPTVFEVVGTTPITDPFGKVIGYNSTVSRSENQKIGQ
Ga0169931_1000791513	F000258	GGAGG	MTANYKLDAMLELRKFLWKELTERDIFDDEYWSDNVNENLIPIIPVQQLPEMNQFLSGKKHIVYDKIGMSYDENWLICCEQILFTIYSTDISDINETRNFMTDQFRRMDESAKDINKWTGLSNKFKFHSIYLADISPTAPSEELQGFFSADVILEIKYSRITDGSGRFN
Ga0169931_1000791516	F005479	AGAAG	MPELINTLKALKKKEHETRKFQAMLKGVDLGEYEEEDKGSSFEDIRLRAAGIGATANDVVSLQGSFAAEAGFGIGAGLGYTKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10007915

Overview

Ecosystem & Geography

Associated Families

Sequences