Scaffold Ga0169931_10006305

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10006305
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17956
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (46.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000630522	F039113	N/A	MDSTLREIKEIRDALQSIDTSLQIIASDNTNNRRTTAFVSKKIICQRLNIPGIALDKLIYQGITSGGKSGLVEGLHFCKIDPTEQNSSKFLYDPQAVIHSAWFNFQNNV
Ga0169931_1000630528	F023840	N/A	MHSQDGQLVVGLTLEDDLVLTRLKNKARNLKGNARDQYLWKTIYRFVCRERAYKSVMGEYGVAIDINIDIFEEECDE
Ga0169931_1000630530	F008401	N/A	MLALSYLQQILANVITSTAFNSPTPMETARLLTIAQTAELLNCSAGFVRKRIALTESNQPGGWPKGIFVNLQPNGAKSLYRINQDALQDYLKSDVEASPEEAKVEVSTACTL