Scaffold Ga0169931_10006228

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10006228
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18061
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023345	Metagenome / Metatranscriptome	210	N
F041040	Metagenome / Metatranscriptome	160	N
F043929	Metagenome / Metatranscriptome	155	N
F050320	Metagenome / Metatranscriptome	145	Y
F053293	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000622814	F043929	N/A	MNKFYIIDTTQRKEPFIFENIQGLVKHLEGTVKRKFKQTRSVYMQNLIDLGHGYDDSDGRNFTESMRTVFNIGIVGKGGTFNNCNVHDVAHYSKYRTEMGD
Ga0169931_1000622819	F053293	N/A	MVTKEIIIDILKDKENFVNIVKDFPGLYSSCVTIKQNVSVENVDNAMNKILSFLEKSEPFKKLIQNLVNTPKVIEKNDISGTVLEIDKNDESYSKLIEQSKKEKWIYKGLTIVDGYDKLKVYFY
Ga0169931_100062286	F050320	N/A	MNTKLILFSHHKVDELTVNSFNNVKKLNPTWDIVPIGFVGYDLLPNSLVTDTRLYPKNKELVEIDNLHTEDWSNPDFFLYSGYSEFPNYDEYFLYEYDTISNVGIEEFFDTNVDFFGNGIRSPADEEWWWVKQYRKLNPNNHKFNNLHSYGQSTCIYFRNHILKKCTEEILKNKSLYNNMLSEIRGGTLVSQFTSLKSGRYDIEKYISWTVDDINIDTKIPHFYHPYKYI
Ga0169931_100062287	F041040	N/A	MILKNRICILFLHYSVNDVTIQNYELLKKYNPTKNIYPVGFENHNLISGSHIVSKKDLYPKNNILNENKKIEYWSEADLLIYDFYLNYPNLPTYLIVEWDTYSNCSLETFYSNALNMTHFSHMIYPQEKLNDWYWYTQLSENQKLTSNIGGMGPTSGLFFTKSVLSSMVNRMYDNPRLYDNMFSELRLGTLLQQSGYTLQKPFTESDNYINWKYENITFDKNVNGYYHPIKTIV
Ga0169931_100062288	F023345	N/A	MSKTINENEMGDRMFTGQSFVQGGLGGASGLDTYSSPDVSQNPNSFKYAPSLAGSASDISTPPPDDYDNKSTYDPGQYEKDVEDIKYKVTPDEVLAGLQYELKKMVFKRKDLAKELVVRNLKEDNKYYSKLHMLNIDDDDKLPVKPSFMSPESKAEPYNLMATPQQEIVDYRTPQEKEIGKIIREMAQKKYEKRFPKA