Scaffold Ga0169931_10002363

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10002363
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30829
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F071967	Metagenome / Metatranscriptome	121	Y
F083776	Metagenome / Metatranscriptome	112	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000236328	F071967	AGG	MSNQTEALAICSEFADEYGVDIEDNESVVVYMKSEYINELKDMLLKKKYKLKSFKVYGDEALVNFIPIKNKY
Ga0169931_1000236330	F096610	GAG	MAIRPKTYFVKMTDNTDGTITISETKVLDKVNQHARHWRSFDKRKLTNKLRNSVLVSK
Ga0169931_100023634	F083776	N/A	VTVSDRDIDFFAKKLGLSPEKTFLLIQDPDCLPEILNKVSEEDINGIVDISFPVFAELTIIKYSKDLKYSFEEKEYISETVGNKFYNLIEYPLQNKYTFNLEHNEDTAKSILVFLGFFYKSLEKTRRCYPSESIYYNIAKSGFENSDKEEISYHLKDWVKVLRMINNEVWY
Ga0169931_100023635	F017268	AGG	MHLDLNSLFNIVLGALTFLGGWLFTRVFSLFDRQEDLIKNINDKTFTDFIALRKEVEEEGRKHQQEIADLALKVSTTYVTKESFEVYFDRIEDKLDRNFEAIQQHLMNKK