Scaffold Ga0169931

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10001057 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45428
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (16.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45428

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (16.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Rwanda: Western Province

Coordinates

Lat. (^o)

-1.78

Long. (^o)

29.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021755	Metagenome / Metatranscriptome	217	Y
F026863	Metagenome / Metatranscriptome	196	Y
F028487	Metagenome	191	Y
F039601	Metagenome / Metatranscriptome	163	N
F039634	Metagenome / Metatranscriptome	163	Y
F088761	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000105712	F021755	AGAAG	MKRVILKLHDKKYADLVDHKVRECIKKNENYDIEYKGKMMTLSPEDLKTKCVGRKYIERPKYGEQPYHLLSYLWEPTKMKSNGE
Ga0169931_1000105726	F039634	N/A	MKLSVNVYNTLPSKKSHWWQIVFIPTISLMNNVQKHDPYVATNVEWLFWSITVIFSYGKKNTPNYFYTR
Ga0169931_1000105748	F088761	N/A	MTKNYVINNGSFTANGNFSGYTALGERVHIFGRQMEALGWKSNADVSFPFYAIGQMKTINQLNEKGETTGTAERLTALSAFKTREDIKQAHADSTLLDIEIQQEIKAQASSAGLTDAAINSLLQVAF
Ga0169931_1000105753	F026863	N/A	MENKEVKIHKIPLDRLIDTLVELYNRGVDYIDIHGVPGEDFDKMAIVFTREYMTEQGVKNFEGLEEDMDLEIKPHKLTDDDLNILLN
Ga0169931_1000105765	F039601	N/A	MLSPRLTDCVYDASIPATLLEIDEKLAYWANRQYNNIVFSVNNYIPGDVIDDLLHYKQILTYRLCNPTYAMICGLPTTSQVVSRVKVLIHK
Ga0169931_100010578	F028487	N/A	MFNSEILDHLIAKYGIDDVIKFCEMESEKNALLADDFERNKTKKSEPSEFSHDRDWWAAANKQLKRRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169931_10001057

Overview

Ecosystem & Geography

Associated Families

Sequences