Scaffold Ga0169931_10000951

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10000951
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48115
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F004405	Metagenome / Metatranscriptome	439	Y
F022813	Metagenome	212	N
F056609	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000095111	F056609	N/A	MINYSTYEGKFPCKTCKKEVRTMRVYMDTGMASWMCSEKHLSEVILFKKGYKKVKKND
Ga0169931_1000095130	F022813	N/A	MSILTDTGFPPTFLNRYVLSELAFYGLVAESDLLTPSPMVPAQFPTNIEDLYNDSIQIRQTESPVLIVYDRLMRFRPTPFYAHKREQLIYFVYSTDVGKLIDSVRVISNALDREDASAQDINSYSISNPILNSAGEVSIPYNIYFHNTRVYQADESRDVAELASARTLFVNKLIIEYDYHIKTEPDSRYT
Ga0169931_1000095132	F004405	GGAG	MNSCEVTDFMYPMKADIYFPILTQGDYGQPKKDWVYDRTVTCNATSVGGLGTEDIKPETFLQYENKLIARTQNDPRLSSNNSNNATTNILVTNVRDASDNIIYKETAGPRSGRGTIYEIATIEPFAGPFGSIEYYKMLWRRTENQTVGD
Ga0169931_100009514	F000264	GAGG	MHIIMTLLIQKLTNNLMAAKLYTSETWLRKRFVMDKKSPQDIAKECGTSVETIYVYLAKFGLRKSKR