Scaffold Ga0169931_10000489

Overview

Basic Information

• Taxon OID: 3300017788
• Scaffold ID: Ga0169931_10000489
• Source Dataset Name: Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64765
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Western Province
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F069735	Metagenome	123	N
F090401	Metagenome / Metatranscriptome	108	Y
F095373	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_1000048916	F007312	AGGAG	MATFYVGPRPVLRGQNTAEMVNPYTTMTGKSKGSGTYSYYPLYATSQLLDGAPDNHHVPGTGRHPGSVLLSQIFNGTTLYVHPLSGTFADGVGYDGARFRPMEYKGLAGAAAFPASFGHADRASDYSYNNYIFDGVTSSNVFANTGHAQRTDAQGAPASFGSFRPDEYNGLASTKVFTAGYGQAIPTDYDNEYGKNKVQEWRGVPSSRAL
Ga0169931_1000048923	F095373	AGG	VAASKVNYLVIYSGHSQVYGCSSKKIALESAPPEGCSMADKRVLFITFEPDTNNLSVYKVDDEEVQGADIKERKENRK
Ga0169931_1000048939	F012571	AGGTGG	MIEDPDDVVGVCSECHSDQPDQYMYRSPFAQNGSNVPCKYCGGVVVITYRETRDDALDQSDRNRGIN
Ga0169931_1000048950	F069735	GGA	MNLQSIEKLNDLLSEFLSPQITEILDAYGSGSSSDQYFVSIPESDSIDMTMADLASLVARTSNVYGRVTRFAGMARAYYKICEGRYKKVYKSNRTGKNEAEREANALEAAEEQYTAMITAESVVQLAESMEGAARIASESARKLLDKSQSMQIASYREEKGSYLDSDFSTY
Ga0169931_1000048954	F007028	N/A	MPKINRSAQEESLGSPIEQAVNAVAGEISVSTSPVFICGVNRKVNIGNFENVDIYAGITIPLAGIDPLDREAFNEAVKEAAAYGFSLVSKETGERYVLIKEGQQGK
Ga0169931_1000048969	F090401	AGGAG	MPRAYTGNKDGLSKEGAKPGTVKLVEFCKKRWGFSNLGIFVNRSMNNPKATKGDPKWLSVHATGRACDIGYTDRKKAVEAWDWFMKYTKELGIEELHDYAYDSNVNDKKPGWGRGYRCSRGEGEKGVKIYDATNNAGSQGGKWLHIELSPEMAADAAKFEAAWRALPKPGKA