Scaffold Ga0183260_10006540

Overview

Basic Information

• Taxon OID: 3300017787
• Scaffold ID: Ga0183260_10006540
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9107
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0827
  • Long. (^o): 164.1679

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029351	Metagenome	188	Y
F030872	Metagenome	184	Y
F062353	Metagenome	130	Y
F104575	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183260_1000654010	F029351	GGA	MEAKLARADTVDAELDRLISRRASQDTRPDRDEREELWKASVRAHNASRREEMRAAWEAFHEGQAERLRRTMEPLIAHHEARAEECRDQPKGAS
Ga0183260_1000654012	F062353	GGAGG	MTRILRCAACAKRIKPHHPYIGVEDLEAGREFYYHVGPGCQERAAEETAARLERGKVYVMHHYHSSRCPDKAPSWGCSGGCFDTPSFAAAAN
Ga0183260_100065404	F104575	GAG	MGLKGWLKRLERAAQEEMIEVPQQDGSLKRFPPSAAKDAFANVAARMGAGEDAPPEHPLIAAARNSSDPAWSESFYAAGDADEWIEPIQDLSEP
Ga0183260_100065406	F030872	N/A	LAVRCAGTKRDNSPCTATVEPPQRYCWWHDPANADKRRRAASKAGKSKPSRELTGIKQRLSDLAAAVLEGRQDRADAAVAGQLFNTYLRAVSVELKAREQQELTERLEALEEALKRSQGGSRWQA