Scaffold Ga0181424_10256103

Overview

Basic Information

• Taxon OID: 3300017786
• Scaffold ID: Ga0181424_10256103
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 732
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F035551	Metagenome / Metatranscriptome	172	Y
F037990	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181424_102561031	F035551	N/A	EITQALSNGDDVRWANDGYRVQWENLPNGPAITIRYTTNGFGGAMAGSEMKDCYIRR
Ga0181424_102561032	F006728	AGGAGG	MAKLDFNNIVVRHNGRTISIAQHWSRTSEGDFINAQEIADVGELYHDDYEPIRFDDTIDGLINALQAIKKDIDL
Ga0181424_102561033	F037990	AGAAGG	MKFDKPTARKIRDAMQEALDKADVNGVTIKVGNCSFTEGEATYKVKVLIDGAKSKEEQDLEQMATLMGLNTYKIATLQGMRVSLVSYNSRARKRPWVVQDLTTTQKYII