Scaffold Ga0181424

Basic Information
Taxon OID	3300017786 Open in IMG/M
Scaffold ID	Ga0181424_10000424 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18863
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18863

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050424	Metagenome	145	N
F054053	Metagenome / Metatranscriptome	140	N
F090413	Metagenome / Metatranscriptome	108	N
F104032	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181424_100004241	F050424	N/A	IEFENIYKDRVIDTIQKLLKQNLASIPIVFDEHRGQESFLIVPDADTFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGQVSSVEYTRDEDDETISNVIITFQCNTNEVIS
Ga0181424_100004242	F090413	GAGG	MKYKHIKGLQLQKPSNLKTTNRKIRELLAGGEVELEKENLEEFESLGVQVQPIRKEPKKKVKKEEK
Ga0181424_100004243	F104032	N/A	MAVSGKVYAKSDFSVGIKNKNATAFETAASNSAAYELLPVINVSAPVLNLVESGEIRSNNAGMVELDIDQFRTTKGGFITMDFEVPAERDMIVRMLANVLQDHTCDESGSAPFIHTIQSTDSAVLARPDFTGTSATSGENIGIPCIFDIGLYYPESAQDKMITSAVLQSLTMNFDMADGRCLLSGTFYSGMASSSKFLVEQTLSANSAAPTLMSTSPTQIESYFDVKKLDVDDQTLEDIIVTAVSFTFENNVARVGRDSNGDAESYAFGIPSVNITGEISLMYDGNANFAATKNILQDFLGSGDTRGATATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNADTGAVITIPFKVVQPTSSGAASGTAFKFQYADSTPSTGW
Ga0181424_1000042433	F054053	AGG	MVMFFLGLCVGIILSMTGAMMWGHRLSIKEDELNQQLIKDFQDKYMETQEQKFYKRYET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181424_10000424

Overview

Ecosystem & Geography

Associated Families

Sequences