Basic Information | |
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Taxon OID | 3300017785 Open in IMG/M |
Scaffold ID | Ga0181355_1093647 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1247 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011646 | Metagenome / Metatranscriptome | 288 | Y |
F011756 | Metagenome / Metatranscriptome | 287 | Y |
F018703 | Metagenome | 233 | Y |
F022400 | Metagenome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181355_10936471 | F011756 | N/A | LSGDEFALSGGYEELINCNECDVMYDRVEYRSDTCSDCEDKSIARERGSK |
Ga0181355_10936472 | F011646 | GAGG | VSNIVELRNGTVKRTIFYEVSDAQNIAIWGGESPSEALKWYRESPLDSKIWVSEWLTDEEDAREMMPPIELTPLVLSTIANCMERWRN |
Ga0181355_10936473 | F018703 | AGGTGG | LSKTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRTYLEEEIEADEKMGKKWLDITGNTKSTNGRSR |
Ga0181355_10936474 | F022400 | AGG | MRRTITRSSQRTTLRLVGTGEEESGSASSPFGPVKAGLIISQITKEVAQLTELLNSLERKIAEANTKSLEVLNTYLNDTEHPAKQTVSFPNTDTING |
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