Scaffold Ga0181355_1093647

Overview

Basic Information

• Taxon OID: 3300017785
• Scaffold ID: Ga0181355_1093647
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1247
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10936471	F011756	N/A	LSGDEFALSGGYEELINCNECDVMYDRVEYRSDTCSDCEDKSIARERGSK
Ga0181355_10936472	F011646	GAGG	VSNIVELRNGTVKRTIFYEVSDAQNIAIWGGESPSEALKWYRESPLDSKIWVSEWLTDEEDAREMMPPIELTPLVLSTIANCMERWRN
Ga0181355_10936473	F018703	AGGTGG	LSKTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRTYLEEEIEADEKMGKKWLDITGNTKSTNGRSR
Ga0181355_10936474	F022400	AGG	MRRTITRSSQRTTLRLVGTGEEESGSASSPFGPVKAGLIISQITKEVAQLTELLNSLERKIAEANTKSLEVLNTYLNDTEHPAKQTVSFPNTDTING