Scaffold Ga0181355_1061346

Overview

Basic Information

• Taxon OID: 3300017785
• Scaffold ID: Ga0181355_1061346
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1587
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F019128	Metagenome / Metatranscriptome	231	Y
F025017	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10613461	F019128	N/A	PEIAAGMAGYAGAKIGQSLVGSTSTIGKLLAEDNSFMVNPSMYLQGDMSGDGIYASNYTLSGYEVPGL
Ga0181355_10613463	F002287	N/A	MSQINKLAYVDSKLGAPSDGQQTTRILFNTITNPGTTSGLVFFKTFQGLTNGQTNLVQNKLDASESMVIKSIWLAQYSTAGFLNIFGDLSQQTLSIIVGNQQVVKSLPIQFNQGDNVQAFDRLHTNAGGLVGSLSGTNLDQTNMPVEIRLLTDIVIPPQVSFEVRIDSTNAVYGTGAVVCALSGYGKIFSAGNTF
Ga0181355_10613464	F025017	N/A	MANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGILL