Scaffold Ga0181355_1041262

Overview

Basic Information

• Taxon OID: 3300017785
• Scaffold ID: Ga0181355_1041262
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_10412623	F016365	AGAAGG	MNDLIKITLTTGAIVYGMTAPLPANEAVKETQDAINKWYETASTSISQDVTALGVTVSNMPEKISLGVSNFVDETVAFQKESWAKTLTFEQEKQNWETIKGWFTPATEGEKK
Ga0181355_10412626	F083781	GGAGG	MININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDQDHAELLRADLEDFTNTNWGDGTKTSPYSTAVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK
Ga0181355_10412627	F080943	N/A	ELEGQRITLEDELERLAYTNNFARIAELEGELFDVKDSIKKITSGHWFEDISRAELLKEEATLQ