Scaffold Ga0181348_1090120

Overview

Basic Information

• Taxon OID: 3300017784
• Scaffold ID: Ga0181348_1090120
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1207
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y
F029046	Metagenome	189	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181348_10901202	F085348	AGGAG	MSQPTGIALKVTGKDGHVSYPGYEAYGWEKINAVIQGTLDIEHVAKVEIVDINFQA
Ga0181348_10901203	F020863	GAG	MKWQQPEIYYLRQENKMQTKMEDLHRLVAVLEELVKPLLEGEEVTSGTYESMRYPHLVLQEGSKTYGRAYRIFFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRNLIAGIRTGQMIAEKGAK
Ga0181348_10901204	F029046	AGG	MRLQEIDTIQDLKEWVIENMPNADVYEDMYGTLVIRTNLGVAMGGYLFDKS