Scaffold Ga0181348_1059665

Overview

Basic Information

• Taxon OID: 3300017784
• Scaffold ID: Ga0181348_1059665
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1546
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052598	Metagenome	142	N
F054041	Metagenome / Metatranscriptome	140	Y
F058151	Metagenome / Metatranscriptome	135	Y
F099316	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181348_10596652	F054041	GAGG	MTVIFTCGHKAKDDEDGWTISTKAYTRENNRAVDYRTVCNNCYQVYENEDLVLFGEADVAKWLDGE
Ga0181348_10596653	F052598	N/A	MNTFKMTVTDEFHCDFVYVTENKEDLLDRVALWLAQLDNTPIYNLNIEVNP
Ga0181348_10596655	F058151	GGAG	MESQTKSSLEALIDNVPTDVSGKWVKKEELYSFAAAVANHVLSKVENKLKNSNV
Ga0181348_10596656	F099316	AGGA	MWRIRKMGDENGYIVRNEELAYQLLNHFNLKGDWEMIEITEYELGDPMEQ