Scaffold Ga0181348_1012006

Overview

Basic Information

• Taxon OID: 3300017784
• Scaffold ID: Ga0181348_1012006
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3745
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Antarcticimicrobium → Antarcticimicrobium sediminis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F012569	Metagenome / Metatranscriptome	279	N
F060708	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181348_10120061	F060708	N/A	NPLGVNETNLMKGYYRQEQKLGSRFKSKYTPDSIKRATLRRKKYE
Ga0181348_10120063	F012569	N/A	MSRALDKSQAQYGFSVGTQGTADSGYWAIQMLTDTTFSTIAGKFDGTLTGVTIGAGNIIYGEFNSYTAGTGTVIGYKAG
Ga0181348_10120069	F003112	GAG	MTGQEYACFKEALKFAVENNNMVKETKYVGKVKHLLSVNRSIKRIVEDGRDRDDITDAVVHLAVALKYLEARGRES