Scaffold Ga0181379_1073182

Overview

Basic Information

• Taxon OID: 3300017783
• Scaffold ID: Ga0181379_1073182
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F073140	Metagenome / Metatranscriptome	120	N
F096597	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181379_10731821	F073140	N/A	MSWQLEGEDDPTKKRISNLHTKPYGCYFMSNNKWLSMYYYLVYRDEGMGCLWESSNPNVRIKYSVTLKTFVIAPEQGRCILGD
Ga0181379_10731822	F002915	AGG	MKGLFLLSLIIPIIAQGKEVFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIKQLEKKAKGTE
Ga0181379_10731824	F096597	AGG	MKKLLLIALTIPNFVLADDFKLVCEGEESNYRNDVLENTSKTSFTLHVRDDSILIDTMTYKSKTFDYGAIKGS