Basic Information | |
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Taxon OID | 3300017783 Open in IMG/M |
Scaffold ID | Ga0181379_1001230 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12146 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (96.15%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000375 | Metagenome / Metatranscriptome | 1217 | Y |
F013099 | Metagenome | 274 | Y |
F016668 | Metagenome / Metatranscriptome | 245 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181379_100123011 | F016668 | AGGAG | MIPVGQLRLLLTKAGLDYVITRVDGNVAHVNILVAEQPDVQR |
Ga0181379_100123014 | F000375 | GGAGG | MTKLYDLEPMIMDCWHVCEDLQVVFRQIGDGEREPTHDEMMNTLMGMQQLYHWKFEQLFNKYEDVLRDRQ |
Ga0181379_100123017 | F013099 | AGGAG | MNTVWLLIWFVLVPENGVRYYHLGTYDNETSCKTGLRDAAVMVNAKNETVECIGVQVDA |
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