Scaffold Ga0181379_1001230

Overview

Basic Information

• Taxon OID: 3300017783
• Scaffold ID: Ga0181379_1001230
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12146
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F013099	Metagenome	274	Y
F016668	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181379_100123011	F016668	AGGAG	MIPVGQLRLLLTKAGLDYVITRVDGNVAHVNILVAEQPDVQR
Ga0181379_100123014	F000375	GGAGG	MTKLYDLEPMIMDCWHVCEDLQVVFRQIGDGEREPTHDEMMNTLMGMQQLYHWKFEQLFNKYEDVLRDRQ
Ga0181379_100123017	F013099	AGGAG	MNTVWLLIWFVLVPENGVRYYHLGTYDNETSCKTGLRDAAVMVNAKNETVECIGVQVDA