NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1096375

Scaffold Ga0181380_1096375


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1096375 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1028
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022979Metagenome / Metatranscriptome212Y
F053973Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10963751F053973AGTAGMKDKFSFGAASVMREVPPGETAMIKFNGKAEKVETDWGDKFSYKIIIFSHPSYDSIPKEGIDSVWQSKSQASENLYS
Ga0181380_10963752F022979N/AMAKGDTFFLRTSFDTSGTDYVSDNIDISAYTDPARGRVLVVDKAFVSFSTNAGGPVLQADIDAVIGHRSLGAQACSEKQTALVSMSDNSLFMRSNLYASNTVNDAGSVGTMGLFEETSALNPAEYVGGFIIPTDAIHCGVDATVAWTAELKIGFMFEVHTEKLSLQRIQELLVSLTAN

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