Scaffold Ga0181380_1063654

Overview

Basic Information

• Taxon OID: 3300017782
• Scaffold ID: Ga0181380_1063654
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F024920	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10636541	F004603	AGGA	MIFSININGSIIDWCYTINNQEKQYHKTWIPKLRDIQIITKDLNGLTISEVKKIILEDIQPDITMVKEHNNKLARARRMGI
Ga0181380_10636543	F024920	AGGAG	MNMIGELLDKYHEDDFDDLLIQIIKHMKEVKELREYDEEQD
Ga0181380_10636545	F002399	AGGCGG	MKTRSHKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWQAFSTALTFPNGKPTQRGK