NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1036248

Scaffold Ga0181380_1036248


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1036248 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1796
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076041Metagenome118N
F101256Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10362481F101256N/AKMEFHKRSASGESVETLREELKDGHLLIYGVDYWEEINEGVKPGTLVDLEDIREWINNKSARYGGSFPPASAIQRKLYSKGSSTKEEDLHIIEKVLDDNKTEITRQAEKLVGELLKLR
Ga0181380_10362482F076041N/AMAIALTTQPTADGLYSAYLPVKFVATETANNPAHLTFSLRTSAGATIPNVPNYIAANINNTYTFDASSYLKSILDVLTEQGKSTSAIEELTDLYGKYEVIVKDTINALTDLTSNEFYAFGNIDGLRHTNDETAYDGIKRKGMLFGSELTGGSFAPKYQGTFDRCVVFAQASVIVVNTYADNKPNDGSTINETANIDISSYTNKLISVPLNRTFLQSRALIPPSSTPLSSYKGFMVQYASLGKIYCYFEDRCNIEEFVFINKYGVKENIKFQTYNYESINTKSDSYRVGGYTHTGNTYYFNTSANNVKINQDILEDYEVRGQFFPIKHMGELHDFVSSPLQWVVDESHEIKELIPINVLDGGFKMAVKSRGVEFNFKYRKAQTKPSFI
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