Scaffold Ga0181380_1029636

Overview

Basic Information

• Taxon OID: 3300017782
• Scaffold ID: Ga0181380_1029636
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2008
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10296361	F051963	N/A	KVVTYLRDVAKIQTPIIEVSGTFPSEDDNIAYGLYVDDVTENARSVNQLGVQSCASMYNAEVQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0181380_10296363	F003807	AGG	MTEQHDVWLKSDDEKLRSLISDEAKMMPMLENMQATVRQLKAKQQFRLALLNQLLESLHGETK
Ga0181380_10296365	F078735	N/A	MKSAKMSTIMQIDGIGKRYGMLPSQVISEADTFDLYIMDAAMSFEHYHHKKQNSKNGLAVPDYSQEELQEILGKKKK