Scaffold Ga0181380_1023901

Overview

Basic Information

• Taxon OID: 3300017782
• Scaffold ID: Ga0181380_1023901
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2264
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10239011	F006793	AGAAG	MTNTRSNQEEIVNRINYAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTESISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVARKK
Ga0181380_10239012	F016820	N/A	MTKKEFSYIVFSSCGDSVQEIHGVYKDLKGASYGAMTALSTLFPKHGDEAKIIRCEIISTEEAQIKYEKANPKDIFEKCEDGFCPMPTLQLKEAS
Ga0181380_10239014	F099447	N/A	MPKKDANKIINHCFSDLIKWTYDDAVFQLTQIFSFTDEECEQLIKENDIVSSSTKEVIMNPEPNFNATAPRDVRDLADNLWHARKHISDAKKLISATALTADYYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGHVPPLK