Scaffold Ga0181380_1003594

Overview

Basic Information

• Taxon OID: 3300017782
• Scaffold ID: Ga0181380_1003594
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6412
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027355	Metagenome / Metatranscriptome	195	Y
F047384	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10035943	F047384	N/A	MSKLTNITVVTDAGGTETLTIQNYAETDELQFWGSTFDEALDGSLRSNFRDFRRTVELTYNLCTTADDYRRICNNIATDFINGSTFIYIGIDTSSLFRVVLEDDFAHRVQYANQHSLFVPKITLKAFDLGVVITLNFEDWRFVDDPLGIEEYRDYGLISPSDPVTVQLDYGSI
Ga0181380_10035946	F027355	GAG	MGRITKVQGEFMGVRFEVKPTPIRFDKIIEERRNMLMNWYKENHPKLHKKLDSDNISIDDYTMEDLDGINAWRLDEEFRAKYCKYTAKHCMKLDKKITDATWKSDDLELGTLEEAWDFFTNRRQVPSNGVGVL