Scaffold Ga0181423_1099774

Overview

Basic Information

• Taxon OID: 3300017781
• Scaffold ID: Ga0181423_1099774
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1137
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181423_10997742	F026714	GGAG	MANTYKKLTVYLNAEQEKVLTDFDLKIIKKDDFDLLHYTVGIISKRLAETNHKMITDVDPNTCDPVTLQHSSKTIG
Ga0181423_10997744	F056144	AGAAG	MIKNIYRGYDIVEYDTQWKVELDNKSIATFDKVEGVSGEASCMCEIDRIKRQEREEVNANIQRVDAQVKLDNNIKKARNNGS
Ga0181423_10997745	F018451	GAG	MAVSKHIDVVSPNPKAVLPKDYKFNKIQHSPKVLQVVDGMLGFEYNGTYIVDPTLDETGRFPVSATTYYKISAKDKNRMIKANIKL